| 2026-09-02 | Riad Šuta | FC Botosani → Arsenal Česká Lípa | Free agent |
| 2026-09-01 | Riad Šuta | FC Botosani → Arsenal Česká Lípa | Free agent |
| 2026-08-20 | R. Idowu | ST Mirren → FC Botosani | Transfer |
| 2026-08-19 | R. Idowu | ST Mirren → FC Botosani | Transfer |
| 2026-08-03 | Aldaír | FC Botosani → Ho Chi Minh | Free agent |
| 2026-07-28 | Riad Šuta | FC Botosani → Suta Riad | Free agent |
| 2026-07-23 | A. Dumitru | FC Botosani → Metaloglobus | Free agent |
| 2026-07-22 | B. Bayeye | Villefranche → FC Botosani | Free agent |
| 2026-07-21 | B. Bayeye | Villefranche → FC Botosani | Free agent |
| 2026-07-14 | J. Marković | Farul Constanta → FC Botosani | Free agent |
| 2026-07-13 | A. Brașoveanu | FC Botosani → Sighetu Marmaţiei | Loan |
| 2026-07-13 | J. Marković | Farul Constanta → FC Botosani | Free agent |
| 2026-07-09 | D. Dinca | Concordia → FC Botosani | Free agent |
| 2026-07-07 | Ș. Pănoiu | FC Botosani → Concordia | Free agent |
| 2026-07-06 | Ș. Pănoiu | FC Botosani → Concordia | Free agent |
| 2026-06-30 | Enzo Adrián López | FC Botosani → Bylis | Free agent |
| 2026-06-30 | A. Friday | FC Botosani → Universitatea Cluj | Free agent |
| 2026-06-30 | M. Pavlovič | FC Botosani → FC Noah | Free agent |
| 2026-06-30 | Mario Preda | FCSB → FC Botosani | Free agent |
| 2026-06-30 | M. Diarra | Erbil → FC Botosani | Free agent |
| 2026-06-30 | Gama Gabriel | Al Mesaimeer → FC Botosani | Free agent |
| 2026-06-30 | Ionuț Cristian Gurău | Bylis → FC Botosani | Free agent |
| 2026-06-30 | G. David | FC Botosani → Cetatea Suceava | Loan |
| 2026-06-30 | A. Ciobanu | FC Botosani → Cetatea Suceava | Loan |
| 2026-06-29 | H. Ongenda | FC Botosani → Ongenda Hervin | Free agent |
| 2026-06-29 | Enzo Adrián López | FC Botosani → Lopez Enzo | Free agent |
| 2026-06-29 | A. Friday | FC Botosani → Universitatea Cluj | Free agent |
| 2026-06-29 | L. Kukić | FC Botosani → Kukic Luka | Free agent |
| 2026-06-29 | A. Dumitru | FC Botosani → Dumitru Antonio | Free agent |
| 2026-06-29 | A. Dumitru | FC Botosani → Unirea Alba Iulia | Free agent |
| 2026-06-29 | Aldaír | FC Botosani → Aldair | Free agent |
| 2026-06-29 | L. Popa | FC Botosani → Popa Luca | Free agent |
| 2026-06-29 | Mario Preda | FCSB → FC Botosani | Free agent |
| 2026-06-29 | M. Diarra | Erbil → FC Botosani | Free agent |
| 2026-06-29 | Gama Gabriel | Al Mesaimeer → FC Botosani | Free agent |
| 2026-06-29 | Ionuț Cristian Gurău | Bylis → FC Botosani | Free agent |
| 2026-06-29 | A. Bota | FC Botosani → Universitatea Cluj | Return from loan |
| 2026-06-29 | I. Filote | FC Botosani → Filote Iustin | Free agent |
| 2026-06-29 | D. Pășcălău | FC Botosani → Pascalau Darius | Free agent |
| 2026-06-29 | A. Ciobanu | FC Botosani → Ciobanu Alin | Free agent |
| 2026-06-29 | Ș. Tomache | FC Botosani → Tomache Serban | End of career |
| 2026-02-22 | G. Cîmpanu | FC Botosani → Chongqing Tongliang Long | Loan |
| 2026-02-09 | A. Bota | Universitatea Cluj → FC Botosani | Loan |
| 2026-02-08 | Lucas de Vega | Panevėžys → FC Botosani | Free agent |
| 2026-02-07 | Lucas de Vega | Panevėžys → FC Botosani | Free agent |